Hi Laura!
I can certainly empathize, as I've struggled with readings for similar units in courses I teach. The problem I've run into is that the pro-Intelligent Design (ID) literature simply isn't very compelling, at least not to the standards we typically look to for philosophical (or biological) work. Much of the debate has taken place in non-academic settings and is primarily political; this has certainly affected the rhetoric and strategy of argumentation. The upshot is that ID proponents are pretty good at political rhetoric, though often at the expense of good philosophical or biological arguments (though that's not entirely accidental). It also means that a lot of the literature is from popular sources. The upside to this is that it's often very engaging, the downside is that the arguments are typically less developed.
I would recommend drawing from the popular literature, though
you may have to make the case for ID where the ID proponents have not. Sahotra Sarkar does this in
Doubting Darwin (which I'm using in my Phil Bio class), providing historical examples of new scientific theories that also required major changes in underlying metaphysical commitments. In doing this, he sets criteria by which to judge the ID challenge, and finds it badly wanting.
Ultimately I think you have to decide whether you want to tackle the political side of things, or simply look at the biology. Personally, I find the former generates a more interesting discussion, and can easily incorporate the latter.
That said, here are some things to consider looking at from Behe if you want something more systematic:
I'd also recommend H. Allen Orr's New Yorker article "Devolution: Why Intelligent Design Isn't", from May 30, 2005. It does a nice job explaining what's wrong with ID, and also discussing some of the underlying politics. Or consider Jerry Coyne's (2007) “The Great Mutator” The New Republic, June 18, 38-44. Both are popular pieces, but very good.
Anyhow, that's a start. I'd be curious what other people assign if they tackle the subject.